BIBI, a bioinformatics bacterial identification tool.
نویسندگان
چکیده
BIBI was designed to automate DNA sequence analysis for bacterial identification in the clinical field. BIBI relies on the use of BLAST and CLUSTAL W programs applied to different subsets of sequences extracted from GenBank. These sequences are filtered and stored in a new database, which is adapted to bacterial identification.
منابع مشابه
Different Methods for Isolation and Preliminary Identification of Azotobacter
Plant growth promoting rhizobacteria (PGPR) are known to influence plant growth by various director indirect mechanisms. Thirty–two strains were isolated from 15 soils sampled in central Iran, byusing and comparing three different methods. The screening of soil samples by means of soil paste–plate method combined with isolation on mannitol agar proved to be the best strategy in terms ofreliabil...
متن کاملDifferent Methods for Isolation and Preliminary Identification of Azotobacter
Plant growth promoting rhizobacteria (PGPR) are known to influence plant growth by various direct or indirect mechanisms. Thirty–two strains were isolated from 15 soils sampled in central Iran, by using and comparing three different methods. The screening of soil samples by means of soil paste– plate method combined with isolation on mannitol agar proved to be the best strategy in terms of reli...
متن کاملAn algorithm for identification of bacterial selenocysteine insertion sequence elements and selenoprotein genes
MOTIVATION Incorporation of selenocysteine (Sec) into proteins in response to UGA codons requires a cis-acting RNA structure, Sec insertion sequence (SECIS) element. Whereas SECIS elements in Escherichia coli are well characterized, a bacterial SECIS consensus structure is lacking. RESULTS We developed a bacterial SECIS consensus model, the key feature of which is a conserved guanosine in a s...
متن کاملInFiRe - a novel computational method for the identification of insertion sites in transposon mutagenized bacterial genomes
MOTIVATION InFiRe, Insertion Finder via Restriction digest, is a novel software tool that allows for the computational identification of transposon insertion sites in known bacterial genome sequences after transposon mutagenesis experiments. The approach is based on the fact that restriction endonuclease digestions of bacterial DNA yield a unique pattern of DNA fragments with defined sizes. Tra...
متن کاملThe RNA shapes studio
MOTIVATION Abstract shape analysis, first proposed in 2004, allows one to extract several relevant structures from the folding space of an RNA sequence, preferable to focusing in a single structure of minimal free energy. We report recent extensions to this approach. RESULTS We have rebuilt the original RNAshapes as a repository of components that allows us to integrate several established to...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Journal of clinical microbiology
دوره 41 4 شماره
صفحات -
تاریخ انتشار 2003